Software Single Cell Data Analysis Explore a Sample Summary Report (Mouse Brain Nuclei) Insights Included Our data analysis package transforms sequencing output into understandable results, enabling the ability to assess data quality, identify sample differences, and interrogate genes of interest. Each analysis provides an interactive web report allowing for anyone to easily browse the data — in addition to more detailed files that allow for more complex downstream analysis. Connect with a single cell expert Compatible with any NGS Sequencer Starting from FASTQ, the included data analysis pipeline performs several data quality checks and sequencing error corrections. A rigorous computational biology approach maps results back to individual cells, performs cell clustering, and calculates differential expression to inform experimental insights. Seamless Integration with 3rd Party Tools Many biological experiments require specialized bioinformatic analysis or integration with an existing toolset for compatibility and comparison with previous results. We provide tutorials in our support area for integrating the output gene count matrix files with third-party tools to facilitate research in your platform of preference. Interactive Results The data analysis pipeline translates the sequencing outputs into a report for experiment QC or deep biological exploration. We’ve worked with leaders in the field to present the most informative summary statistics: cell coverage and sequencing depth, a cell cutoff graph, and sequencing saturation curves. When it’s time to dive deeper, differential expression results can be mined alongside an interactive UMAP for rapid investigation of genes of interest.